The JAK-STAT signaling network in the human B-cell: an extreme signaling pathway analysis.

TitleThe JAK-STAT signaling network in the human B-cell: an extreme signaling pathway analysis.
Publication TypeJournal Article
Year of Publication2004
AuthorsPapin JA, Palsson BO
JournalBiophys J
Volume87
Issue1
Pagination37-46
Date Published2004 Jul
ISSN0006-3495
KeywordsB-Lymphocytes, Computer Simulation, Cytokines, DNA-Binding Proteins, Humans, Protein Tyrosine Phosphatases, Signal Transduction, Systems Analysis, Trans-Activators
Abstract

Large-scale models of signaling networks are beginning to be reconstructed and corresponding analysis frameworks are being developed. Herein, a reconstruction of the JAK-STAT signaling system in the human B-cell is described and a scalable framework for its network analysis is presented. This approach is called extreme signaling pathway analysis and involves the description of network properties with systemically independent basis vectors called extreme pathways. From the extreme signaling pathways, emergent systems properties of the JAK-STAT signaling network have been characterized, including 1), a mathematical definition of network crosstalk; 2), an analysis of redundancy in signaling inputs and outputs; 3), a study of reaction participation in the network; and 4), a delineation of 85 correlated reaction sets, or systemic signaling modules. This study is the first such analysis of an actual biological signaling system. Extreme signaling pathway analysis is a topologically based approach and assumes a balanced use of the signaling network. As large-scale reconstructions of signaling networks emerge, such scalable analyses will lead to a description of the fundamental systems properties of signal transduction networks.

DOI10.1529/biophysj.103.029884
PubMed URLhttp://www.ncbi.nlm.nih.gov/pubmed/15240442?dopt=Abstract
PMCPMC1304358
Alternate JournalBiophys. J.
PubMed ID15240442