The ASTRAL Compendium in 2004.

TitleThe ASTRAL Compendium in 2004.
Publication TypeJournal Article
Year of Publication2004
AuthorsChandonia J-M, Hon G, Walker NS, Lo Conte L, Koehl P, Levitt M, Brenner SE
JournalNucleic Acids Res
Volume32
IssueDatabase issue
PaginationD189-92
Date Published2004 Jan 1
ISSN1362-4962
KeywordsAnimals, Computational Biology, Databases, Protein, Humans, Information Storage and Retrieval, Internet, Protein Structure, Tertiary, Proteins, Software
Abstract

The ASTRAL Compendium provides several databases and tools to aid in the analysis of protein structures, particularly through the use of their sequences. Partially derived from the SCOP database of protein structure domains, it includes sequences for each domain and other resources useful for studying these sequences and domain structures. The current release of ASTRAL contains 54,745 domains, more than three times as many as the initial release 4 years ago. ASTRAL has undergone major transformations in the past 2 years. In addition to several complete updates each year, ASTRAL is now updated on a weekly basis with preliminary classifications of domains from newly released PDB structures. These classifications are available as a stand-alone database, as well as integrated into other ASTRAL databases such as representative subsets. To enhance the utility of ASTRAL to structural biologists, all SCOP domains are now made available as PDB-style coordinate files as well as sequences. In addition to sequences and representative subsets based on SCOP domains, sequences and subsets based on PDB chains are newly included in ASTRAL. Several search tools have been added to ASTRAL to facilitate retrieval of data by individual users and automated methods. ASTRAL may be accessed at http://astral.stanford. edu/.

DOI10.1093/nar/gkh034
PubMed URLhttp://www.ncbi.nlm.nih.gov/pubmed/14681391?dopt=Abstract
PMCPMC308768
Alternate TitleNucleic Acids Res.
PubMed ID14681391